NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F14TB_102356622

Scaffold F14TB_102356622


Overview

Basic Information
Taxon OID3300001431 Open in IMG/M
Scaffold IDF14TB_102356622 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010872Metagenome / Metatranscriptome298Y
F054961Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
F14TB_1023566222F010872AGGAGVRRHHRLRTLLLLSVVLSGIPRTAAAQWDPFDPPRDPGHLDVSGTAGLRLSTDWSDLILLGSVSPATGALEQVLGRDLVFLPGPVFDATVMYWEGRYGFRAHGGFSRKCLAIAGRCVAIPTLDGPTRGSVSVDGYSADVGGAFGLREYHRNPWVWPYVFFGFGAVTYDIKQSISPPLQMFIEHSPSATADITVNKNFTNFGQTLLISIDELGLETKFALNFGVGTDLRVPLGAAGVGLRLELSDTMHNSPLNIQIAELNTLADEVVRANGGLVHNLRASAGLVLHFGR*
F14TB_1023566223F054961GGAMRLRLQAFIAALTLCLVTVADGPSAQTPEHRFAPGSPPITVRPSALAQIVSELAGSPVNVQRARIIWVVDPHAMVIESDSAFDPTWRDRGRVLVLLDRSRSLAIPRPPVSIAPVNIVGIARTLLGIQAAQDVPWPQALTRREIERLGVRAAILASSIKTSDGVELTSSTAAP*
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