Scaffold F14TB_100812939

Overview

Basic Information

• Taxon OID: 3300001431
• Scaffold ID: F14TB_100812939
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1093
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014739	Metagenome	260	Y
F020768	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
F14TB_1008129391	F020768	N/A	RPYRRHKIRRDLPLQRSLFGQTSQGRDDDWFCPVHSSGLNFPARLDKNGDLFLNRLQVGALPKALRSWFTPETLELMRTTHAAACDALVDASENAARVGASLDGVAARKLSEDLAKRTALVLAYGILSKFVPDVLLRALADAGDVEQPPFPEKSAGAELMQNTFALYQACCALDYTPQ*
F14TB_1008129392	F014739	GAG	VPPEVFHLVSEFCNRQTGFGPLAWDSPGYEDPNYVVRLLHSAFDEVNAEQVRRRVSFAKRLAVARSASEGPTKIAALRRVLGFWLDFLERETWYVRRAFYVGMIPLLRQLAAEYRRQIPTLQLADLLFFDIRELIAGTVDPAVIQTRRHRYMENTDYLSLRGVDPGRLATILGSS*