Scaffold F14TB_100084006

Overview

Basic Information

• Taxon OID: 3300001431
• Scaffold ID: F14TB_100084006
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1242
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F012223	Metagenome / Metatranscriptome	282	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
F14TB_1000840061	F012223	N/A	DTFFIFSGLAVVAFLAAWKAGHFHELDRMGGIPLLVEEEDYYTPEWAYDEEEWADGDA*
F14TB_1000840062	F000805	AGGAG	MAMPSGDFDSPAKVTKYYDYLQAHSQTFQKPDTWHVHWLDLAWLWGFLIVLALVILSWLWQYRTTRQRGVYPVDQFGGYTSELAGPATGFFLLLTVILTAWAVAIIVGHLVWGQKF*
F14TB_1000840063	F001079	AGAAG	MAVAGRDVPSALPYVSWSSVTVAVVPADTWPLVFASMQALKGHTQEYPGCQKLDAFVHAEAGGAVRIYCVTTWDTPEQLEAYLERGYTFDRMLIDVSEVIAEPTVVVEKIF*
F14TB_1000840064	F000280	GGAG	MAERDPEGRQVPARPLVGYRDVGEDVRHSRGSLYRAWIILAVLVAFYLGWTLVVFFLEPGLR*
F14TB_1000840065	F021376	AGG	VYVKHLTSLQFLTYMAFFAVVIAAIFKFMPGKAPPVRTEPYPEDELGAHDRKTAKYFVAGGFF