Scaffold JGI11705J14877_10018621

Overview

Basic Information

• Taxon OID: 3300001419
• Scaffold ID: JGI11705J14877_10018621
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2812
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025179	Metagenome / Metatranscriptome	203	Y
F065238	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
JGI11705J14877_100186214	F065238	N/A	MVEYETVSVGELFQEELDALREQYDILIDKGTDTSLQAAENLEHVIRYFEARLGQTTELYFEGSPGPDDTLH*
JGI11705J14877_100186218	F025179	AGGA	MKQLIITLAILFGVSFTAQADTATTKSLEDRVEALENKTVSIPDGLFFNGEIEMYYDEDTYSSHWDSRAEIITGIESDIDAGVLNWAGGSMRYDSHYSLDTTLNNTITEKQMGLGFGNSRVYIGETDAQRLGFAKTPKVGVPLIITESNSRIDHNEKVVLTFGGWNNNNEFDFDTHSIERDLPVGASI