Basic Information | |
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Taxon OID | 3300001419 Open in IMG/M |
Scaffold ID | JGI11705J14877_10018187 Open in IMG/M |
Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2856 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 15 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004814 | Metagenome / Metatranscriptome | 423 | Y |
F005899 | Metagenome / Metatranscriptome | 387 | Y |
F009502 | Metagenome | 317 | Y |
Protein ID | Family | RBS | Sequence |
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JGI11705J14877_100181871 | F004814 | AGGAG | MIRGDSXDYQLLEKWTKDFDCQGYKSCEIGVREGLGSKIIM |
JGI11705J14877_100181872 | F009502 | N/A | MEKVKLKKEEYEDIYDCIVSDQVPPNEMAEYLEDMSFYKYYIKRRTLGGXWQKESND* |
JGI11705J14877_100181874 | F005899 | N/A | MNSIEDQTEVIHQCPQCNSQGEIMIDEQRIKSILQKERDLLSVAHIKKLEEEIDMLRKQKIYLQSKLREKTEKR* |
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