Scaffold JGI11705J14877_10009028

Overview

Basic Information

• Taxon OID: 3300001419
• Scaffold ID: JGI11705J14877_10009028
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4461
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047994	Metagenome	149	Y
F061371	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11705J14877_1000902811	F061371	N/A	MRTLTEIDNTIDALKDVSTNALSKHGYSRSRQRIVDLSVNLQQAWEKYKVIHGKTYYKELCLFVICRSSSGLRYKSIIKRSGLSGVVVHDCLTELLKEKLIYSKVINEIDNLKRGSYI
JGI11705J14877_100090286	F047994	N/A	MSTENVGDRIMSHPMNDKIIDVINDQWTDMSVEDLKDWLVTHRKTNEVADRVYIGLTYLEHKWKQEMFDSYPDS*