NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20188J14859_1005127

Scaffold JGI20188J14859_1005127


Overview

Basic Information
Taxon OID3300001418 Open in IMG/M
Scaffold IDJGI20188J14859_1005127 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082975Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
JGI20188J14859_10051274F082975AGGAGMGLTWRDAVSSCAIVVIVITWVVYXGGTSLLLISSXWATSAVVLVLGIGCAVVASGDLYTRPQPRMGQVFRWIATGFGTIAVIAGLIGLITGSAHALEILVVVTITWLATGIFWHVLTIGSDRSDEPS*

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