NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20185J14861_1000667

Scaffold JGI20185J14861_1000667


Overview

Basic Information
Taxon OID3300001409 Open in IMG/M
Scaffold IDJGI20185J14861_1000667 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4717
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017686Metagenome / Metatranscriptome239Y
F055303Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
JGI20185J14861_10006675F017686GGAMKGRHTFQKGSYARTGFSHQPCFRFRFSRKAQALLATPVSATRGSRLSQTRSTAATKPSPIPDETARLFQVALHDVVRSSALSMSELRECVKACVGTLRDTNVGPAQMIISMKACAKEGTRRYPQALNEHELSNADFLMDQIIKWSIVEYYRDA*
JGI20185J14861_10006676F055303GGAMSSHHDLMPSPLPEELDRALQGATDRTLVALTVLRKAVRQHVQDERERGTSLPDIEVELRATIARVLKDAVGRDSVDGERDALANQMMKWSKGFYNQND*

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