NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20187J14854_1000383

Scaffold JGI20187J14854_1000383


Overview

Basic Information
Taxon OID3300001406 Open in IMG/M
Scaffold IDJGI20187J14854_1000383 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6457
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004189Metagenome / Metatranscriptome449Y
F089566Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
JGI20187J14854_10003832F004189GGAGGMRRFSDRSGIDWSAFETARPGGLPDRRVKAANVTVSFKCDDGSEVAMDLPVGALEGLTDEELILLLTRGLM*
JGI20187J14854_10003837F089566N/AIAGVLLTAGCRGNGDSDPVPASLPGTYAYAAKGSTFKKPWEFYVKLDLTPDRHYTLTLDKNIDGQKDPRETSVGAYAVSGDQILLRDVRPPLGPSKDVHKLLIKADSLIAEVGWTSELFLKGVGAPNVVLVKQRGS*

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