Scaffold JGI20207J14881_1001246

Overview

Basic Information

• Taxon OID: 3300001398
• Scaffold ID: JGI20207J14881_1001246
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8887
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005786	Metagenome / Metatranscriptome	390	Y
F056860	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20207J14881_10012463	F005786	GGA	MKKKATRITGIRFSEATYKAVVQTAKSRDYASPSAFIRAAVEKELRGADATLDESEQRISASLERYSKQVRRVSTGQQALFAYVDALTKVILSTLPDTDEDTRKAAVARGKLRYSRFLKSVGANMVGDAQAALSELVNRAPEE*
JGI20207J14881_10012466	F056860	GGAGG	MPTDIQTLIGEVAARNHCRIEDGDPIFAVSTINRLMLDEVVEGLIVRVRAAITAFEISARAVETHAGKLLAEEIRGSTSAWKAEIARDINIANVRSCELIDKIHLAHTRPAMLRWGTLGAFAAMAFLCCGILIGIYLR*