Scaffold Lau_10125852

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10125852
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2083
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005580	Metagenome	396	Y
F057768	Metagenome	136	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_101258521	F057768	N/A	MPATTIQRSFDSTPTDKEYFSLTDNMNSSNLGNIQVPQGSTRISRVDCAIDGFNAKGFQVVCRLLGSNMSEQNFTIMGIA
Lau_101258522	F005580	AGGAG	MKKSIPHPSVTGMASGLAIAAYLNAGQSVTGAFGRTSVTEGVIKDVTDGQLGTAFNTLAGNAIDMIGTDVGRKTLVTAGGIALLGAFARKQFPQLKLGGSKLYFRL*
Lau_101258523	F058540	N/A	MDEPRILKLVKPDISSPLKKRDSYLSVKDDDMILVTVDLVEDCKIDTDGGIKDGVRITCREVITKSFINKDKEKEYDYIPTEDIKLKESYSTSSFYLLKDFKTASHWPKEGIFYWVWKASDGLRWEEA*
Lau_101258525	F005319	N/A	MTDQQFLLIWILSFFLYFTIYTIWIPLKTQKKIESWLRSDESDETLLMSLDVITKKIREQMLIDFEEFMLPAARENFQKFFSGAMGNVAREMKNSPEGSQMSMMHEIASELSGQPWYVQMLGSRLMPILAKAAKEGKPDIKPDIGMGLQK*