Scaffold Lau_10121473

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10121473
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3267
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030294	Metagenome	186	Y
F043695	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Lau_101214734	F030294	N/A	MITPHPSITGMAAGFSLVDDLNKGDVVGQLLKGSLSGAINTLSANSQALIKTDPGRKALVQAVGIAAIGTWARKALPATKIGGSKFYFKI*
Lau_101214737	F043695	AGG	MTLSAGTGFNAVGREIFGFAPQINFSAGSTGDDRTAFDFTSPMQLYMCEMQPSINTAGMAAGDILSFSLQGNGLSIFQTKFALAAASEPIQAQLPAIKFILPSRTIVQAVFNMQSGTGMVGTASCVFRGVAFA*