Scaffold Lau_10118022

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10118022
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6659
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018267	Metagenome	236	Y
F044592	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_1011802222	F004771	GGAG	VKVKVGDLVRMKDTMYDSDLVGIVVDRDHHPNSTQIGIKWFGGSGKVDWEPEPWLEVVSESR*
Lau_1011802225	F044592	GGAGG	VKVGDLVRYKGILGIVTAPCIKRWAKSGDVWVLWNNRSKPIVECSGFMELVNASR*
Lau_101180228	F018267	GAG	MTGAGRLSVKVGDLISFKPKSFGDDDWSNPGIVLDSYEHDDRQTGGWKDLIWIVWIDGYKCMVNQRNDDVVYLTGS*