Scaffold Lau_10115565

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10115565
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4597
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y
F076631	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_1011556511	F014809	N/A	MVTTITRTFDATPTDKEYFSLTDNMGSSSLGNIQVPQGSSRISRVDCAFSTFNAKGTSVVCRLLGSNMSEQNFTIWGSAGDTADAGAFQGYMSVPVAFPLAGVNNIDLQIAIQFNDGGSATASGGAVTLYFE*
Lau_1011556513	F005580	N/A	TGMASGLAIAAYLNQGSTTMTATGTTLGTVMTAGEGVIKDITDGQLGQAFSTLSTNAVNMIASDGGRKTLVTAGGIAILGAFARKQFPQLKLGGSKLYFRL*
Lau_101155655	F076631	GAG	MLIDFEEFMLPQARESLKKFWAGAMGNAAQELKGSEEGSQLSLLHNITQDLSGQPWYVQALASKMLPMITEAAAKGSKTKTDAVLGMGLQK*
Lau_101155656	F005319	AGGA	MNDQTFAVIWILSFGLYFLVYTFWIPLRTRKNIETWLRSDESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLKKFWAGAMGNAAQELKGSEEGSQLSLLHNITQDLSGQPWYVQALASKMLPMITEAAAKGSKSTTDTVLGMGLQK*
Lau_101155658	F005551	GAG	MSLAPSKSISRVKDGNIYGWSGSYPLTSSVVTLLDYTNPSAFYLTRITLALDWSGIGDGEILSYVVSVDGQALFIEKFSVLVNNIGLQPKMFEFIIPPNSTVKIQATESANNGAISCILTGYRI*