Scaffold Lau_10093334

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10093334
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2931
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030294	Metagenome	186	Y
F100047	Metagenome	103	Y
F106170	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Lau_100933343	F100047	AGGAG	MALTIARTETQLAATTAFQAMDNLMASTVSSSFVVPANVSKLVSVDVGITADGAEECAALLRFAGNGLADGEQYTVCSSIVNAGSATGTSNNYVSKDTDFNVISGNSIECSIAVTDATTISAAVVMTFA*
Lau_100933344	F030294	GAG	MAAGFSLLDDLNKGDVIGRALGGNLTQALNALSSNAQNLVKTDPGRRALVQAVGIAALGTWARKALPGTKLGGKKLYFVI*
Lau_100933345	F106170	N/A	MGDKKRQPLSFGPSERYLPGLKEGEALTFKLLDIGVDVDTEFGQKLRFSMEVLNVLHHPSSTLKAGKYVWNTTCRAAKDLHEYFVDNDMETCDWTFTLTAEEYGYRINEIA*