Scaffold Lau_10088803

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10088803
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4680
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F062279	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_1008880310	F013357	GGA	MARARYIPGALVEARSSKYGKGFGIIVSGPIMDTKAAGQWRDLSEPQEWFSVHWFEKPGILPSIHRGLAQVSMTKNQIKLVRKR*
Lau_100888038	F062279	GGA	MYERMKEFLYYCINVVMVLILLATSFLYVGINSYIMTRVINDLRLDTYVSYDTGMGVVMLILLLVWAPVWLLRSLPRRC*