Scaffold Lau_10085661

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10085661
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2615
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F024648	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100856614	F024648	AGGA	MCEYHLYPGDMFRTKAGLGLIIKKSGGYFTYSTVADDQRKPCRTIETKRFYGYCDDMSHGQVLEVILVPNRKYRRKRK*
Lau_100856615	F005524	GAG	MDIGDKVQHFSTGSIGTVIDSSYEVETTFQQMCVQWEDDKAPYKDSWERLEALSIIPHIPYDFNIND*
Lau_100856617	F014465	GGA	MIGALVRNCSGIMKIVTGYKCSSRGEKIQFAGDHENAWYSLDDHEILSLGD*