NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Lau_10085421

Scaffold Lau_10085421


Overview

Basic Information
Taxon OID3300001392 Open in IMG/M
Scaffold IDLau_10085421 Open in IMG/M
Source Dataset NameELSC Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5992
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location
Location NameKilo Moana - ELSC (Lau Basin)
CoordinatesLat. (o)-20.0Long. (o)176.0Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015147Metagenome / Metatranscriptome257Y
F096037Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Lau_1008542118F015147N/AMRKTTKNIKWLIDDLGLLEFDAWLWITFWAALTAAGMVLLTGEGPEVYRYWRVFFLNI*
Lau_100854215F096037N/AMKTTVYAWGAQVSNVLHIYAGMTTQKDLGIRLNGVKEIMVGSADSWFGGPEDSALGAYNLDLIYADSSQNYSRHKEQRAINAGWAVEQKYRNASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGRVFQAVESWIKEKVQEEPNLKRKFEAALIAKQQKQALIANITKVLGLEPVLA*
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