Scaffold Lau_10081212

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10081212
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4117
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019733	Metagenome	228	Y
F038476	Metagenome / Metatranscriptome	166	Y
F040334	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100812121	F038476	N/A	GFIIPTDAIHCGIDTGTAWAGELDVGFLFEVHTEKLSLQRIQELLVSLTAN*
Lau_100812124	F040334	N/A	MPSSQPDLNFGPSERYLPGKKLLEGDVLTINIVDFEQKEVDTDFGSKLEFHINVLSSSTDVVTPGKYTWRTVARAARLVHAYYCKSTLGKAVWSEWVWQLTVVENGVSLKTLNLDSDPNEDTTKHGTPALGNTIAGDGE*
Lau_100812125	F019733	N/A	MAKNDTFFLRTTLTSVLATYVSDNIDISAYTDPSRGRVLVVDNAYITYSTDGQGPIVAADVVASGTGGKSMGAQCCSEKQISLVEMSNNSLFSRSNVYATVATAGMITWLQMTDSLNPTTYESGFIIPTDAIHCGIDTGSAWAAELDVGFLFEVHTEKLSLQRIQELLVXXXP*
Lau_100812128	F040334	N/A	MPSDTPDLNFGPSERFLPGNKLVEGDVIKMNILDFEQEEVDTDYGSKFQFYLNVLSSSTDVVSLGKYTWRTRARAPRKVHAYWIKQKTDVSEFSHWVWQLKVVEYGYSLKTLNSSSAQSKSVTKRGTHVPGHGAAGDGEA*