Scaffold Lau_10053660

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10053660
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3491
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020469	Metagenome	224	Y
F023247	Metagenome	211	Y
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100536602	F023247	GAG	MVIVCLPGGLEALTAGGTTLLDFISPNRFYTVVTNVSFDYSGCSAGDVLSWTLQGNEEALHVSKFLIIDAGIGPQFPNLYYTIPPNTGMKVLAQGPTGLMTVVLEGKEVE*
Lau_100536606	F020469	N/A	MVITALELLGYLIAWSIFYFGFASYVAQKSKDAWVAWAKSPDSDDDLLIILEPIIDEIEERTHGMLETFQSSFFGSLGAASKKMDDATGQSTIKAITKDNPIMGLVAEMLMKRSGLEGLLNTQNSPEVGVKQPQKSTKLGLK*
Lau_100536608	F051571	N/A	MVRRRRASRRRAPRTFGINVIETGTALALISQVNAGAAVQSFLAGNLNAGLSTISKAAQSNKQAIIKTLIGSMVAKVAVKTLSRGSPVLASLGPIKVRA*