Scaffold Lau_10040893

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10040893
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100408931	F005580	AGAAG	VPVGLYTRKGANGRRMYFRQVRKTARRAYKNKNNNPKRGKYMKSIPHPSVTGMASGLAIAAYLNNASTTGATASSRARAEGVIKDVTDGELGKAFATLSGNAIDMVTSDTGRKTLVTAGGIALLGAFARKQFPQLKLGGSKLYFRL*
Lau_100408932	F014809	N/A	MVTTIQRSFDSTPTDKEYFSLTDNMNSSNLGNIQVPGGSSRISRVDCAIDGFNAKGFQVVCRLLGSDFSEQNFTIMGIAGDTADAACAVGFNSVPVAFPIGNANNIDLQIAIQISGGGSMAASSGSVTLYFE*
Lau_100408934	F005551	N/A	MTLAASKSISRAKGGNIYGWSGSYGLTSSAVTLLSYTNPSAFYLTRITLGIDWSSISVGEVLSYVINVDGQSLFVEKFVVDADNTGDQPKMFEFIIPPNSTVKIQATESANNGSISCMLTGYRL*