Scaffold Lau_10033191

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10033191
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2308
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y
F002192	Metagenome / Metatranscriptome	585	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100331911	F000754	N/A	TMDFTVNNAEFAKNASVSTLVTGQPFGWNGTGYVLNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG*
Lau_100331913	F002192	GGA	LLYSSLFIAILALFLSLYAGARVGNFISSTKDLDWTAIANMTGDLASTKKTIQTLNNRINGMHSPKIAEQELMLQLMQNQNQKPNGRMQGG*
Lau_100331915	F001416	AGGAG	MPLVKKKLSVAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFTVNNAEFAK