Scaffold Lau_10013539

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10013539
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5190
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y
F094574	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_1001353910	F094574	GAG	MDTKLRSFNITNSKMYERFKQIQLERDKNATIRLNELIEREVKEADPQFKELNAVRSKDAPDIITPNPFLKSQSHSLPEWDDYMQTLTKKEHSEL
Lau_100135395	F016759	N/A	MSMEPIQRQMTNPAVGAVGTPVLMQDTVTLLTFIQLNVPNTILDMYNSPDPAAATDFYTYELQKNSISTGRTFFSTAMSTASAGRAAVGPLRLASGQLQMSGTPVGALAPINDQNIVIKFSNGF*
Lau_100135396	F007837	N/A	LVSGLAVLPKVSARNLSLKLNTVIDLKTTANPLIVNYAASYQSLSNSLMIDNQDAANAVTLRLNRSVNTITIAGGNFRTFNDAWIEQIDLTGPSTNTQVTAQISPLTQISPYGAGVTN*
Lau_100135399	F013596	N/A	MEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITTKLRKQQDEYVAEVERKNRSLQGKLNSMQKGPVLSEIGDLDGVLPELVGQLDGILPKWATKFLKSNPDIVNTVVEYAKSNPDKAKELIGKFVKVGSPTKASTDATLLGL*