Scaffold Lau_10007951

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10007951
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3157
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100079512	F005580	AGGAG	MKAVPHPSITGMASGLAIAAYLNSGVETTTQTGTSLGTITTMGEGVLKDITDGQLGQAFNTLSSNAINMIGSDGGRKTLVTAGGIALLGAFARKQFPRLKLGGKSLYFTL*
Lau_100079513	F014809	GAGG	MVTTITRTFDATPTDKEYFSLTDNMNSSNLGNIQVPQGSTRISRVDCAFDVFNAKGAQIACRLLGSNMSEQNFTIWGAAGDTADAGAFDGYNSIPVAFPLAGVNNIDLQVAVQFSSGGSATASGGSVTLYFE*
Lau_100079515	F005551	GAG	MTLAASKSVSRAKGGNIYGWSGSKALSASAVTLLDYTNPSAFYLTRITLGVDWSGISATEFISYTINVDGVALFVEKTIITADNLGTQPKMFEFMIPPNSTVKVQALQSDNNGFITCILTGYRV*
Lau_100079517	F005319	AGG	MTDEQFLLIWIASFFLYFAIYTLWIPLKTQQKIESWLKSSESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLQKFWSGAMGNAAKELKGSEEGSNLSLLHNITQDLSGQPWYVQALASKMLPMITEAVKTQPKRTSDAVIGMGLQK*