Scaffold Lau_10004988

Overview

Basic Information

• Taxon OID: 3300001392
• Scaffold ID: Lau_10004988
• Source Dataset Name: ELSC Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2536
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location

• Location Name: Kilo Moana - ELSC (Lau Basin)
• Coordinates
  • Lat. (^o): -20.0
  • Long. (^o): 176.0
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023247	Metagenome	211	Y
F038853	Metagenome	165	N
F051571	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100049882	F038853	AGG	MKSSKFHFGATSVMREVPPGKSAVIQFNGKLEEIETEWGAKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDLAAALEQGIKELSEAFHKNKWELTRTEEGTYFLDVIL*
Lau_100049883	F051571	AGG	MSRRRAPRQFGINVIETGAALALLDQTSAGSAMKSFIAGELNTGLTTLSAAAKRNKSTITKTLVGAFLAKAAVKSFSRGSPVLASLGPIKVRA*
Lau_100049886	F023247	AGGA	MTLSTGPTLNFFGDHVFAWSGQEALTAGVTTLLDFISPNRFYSVVTNVSFDYSGCSAGDALSWTIQGNGEPLHVAKFLIINAGVGPQFPNLYYTIPPNTGMKVQVTGPTGXS*