Scaffold Lau_10004683

Basic Information
Taxon OID	3300001392 Open in IMG/M
Scaffold ID	Lau_10004683 Open in IMG/M
Source Dataset Name	ELSC Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001392 Open in IMG/M

Scaffold ID

Lau_10004683 Open in IMG/M

Source Dataset Name

ELSC Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3344
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3344

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From The Eastern Lau Spreading Center

Source Dataset Sampling Location
Location Name	Kilo Moana - ELSC (Lau Basin)
Coordinates	Lat. (^o)	-20.0	Long. (^o)	176.0	Alt. (m)	Depth (m)	2600
Location on Map

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Source Dataset Sampling Location

Location Name

Kilo Moana - ELSC (Lau Basin)

Coordinates

Lat. (^o)

-20.0

Long. (^o)

176.0

Alt. (m)

Depth (m)

2600

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y
F049937	Metagenome	146	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Lau_100046831	F005580	N/A	ARRAYTNKNNRRKSYMKKGIPHPSVTGMASGLAIASYLNQGGTDTAFGKSIQLDGVIKDITDGQLGQAFSTLSGNAINMIASDAGRKTLVTAGGVAILGAFARKQWPTLKLGGSKLYFRL
Lau_100046832	F014809	N/A	MSATTITRTFDSTPTDKAYFSLTDNMLSSSLGNIQVPQGSTRISRVDYTFACFNPKGYAVVCRLLGSNMSEQNFTLMGVDGDGTADSGIVNTSGSQDTAFPLAGVNNIDLQIAIQFASGGSATASSGSVTLYFE*
Lau_100046834	F049937	N/A	MTLAPSESVLRVKDGYIYGWSGSKSLTSSAVTLLNYTNPSEYFLTRIMIGIDWSGIGASEVLSYTIQVDGTGLFVEKSVIGDVGVVGAIMQPKMFEFVIPPNSTVKVLATQSANNGSISCMLTGYKI*
Lau_100046837	F005319	GAG	MTDETFAIIWILSFGLYFLVYTFWIPLRTQRKIEYWLRSEESDETLLLALGVIVKKIREQTLIDFEEFMLPHARENLQKFFSGAMGNVAKEMKNSPEGSEISMMHNIAKELEGSPWYVQMLGSKLMPILAKASNEAKPNIKPDIGMGLQK*
Lau_100046838	F058540	N/A	MDASNKEFVKPDISSPLKKRDSYLKVKDDDMTLVTVDLAEECKIDTDKGIKDGVRVTCRLVTTIENLDRDGEKTFEYHADSEPKTKESYSTSSFYLLKDFKTASHWPKEGIFYWVWKASDGLRWEEV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters