Scaffold JGI20194J14741_1017090

Overview

Basic Information

• Taxon OID: 3300001383
• Scaffold ID: JGI20194J14741_1017090
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 604
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Vineibacter → Vineibacter terrae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013130	Metagenome / Metatranscriptome	274	Y
F070394	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20194J14741_10170901	F013130	N/A	SSKTATKDKRRRTTMVPVTTMVEIPVLSEKERTELLTSLKKAEVRAKANKATDYDPKTFKDRLIGIYRGGKR*
JGI20194J14741_10170902	F070394	N/A	MAFRIRIDPVALRQIDQFAVYLRDYSEDFAIEQIERLDRILSLNLAXQSPLTWGYFPLTGAPYRAYLFSVGRRTQYWIIYTVDEDTSTVDILSFWNSSRDPDTIEL*