Scaffold JGI1356J14229_10015123

Overview

Basic Information

• Taxon OID: 3300001380
• Scaffold ID: JGI1356J14229_10015123
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4987
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -73.604444
  • Depth (m): 5.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049310	Metagenome / Metatranscriptome	147	Y
F094577	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1356J14229_100151232	F049310	AGG	MSSSITKTPIEPDRDHEAAKARAELLRRAELQGVKPFTSLEDFAGDPELTADFDVDEFLRQVREDRDRPSGRSVE*
JGI1356J14229_100151234	F094577	GGA	MMDDYRYDYLRRKRYVVHEEHEQFIPPETLVEMREYETVEFYSRERIRELSEKGLIQEELKRRIDELLRLRREHPEGSNTECMCMDMITELISKLDLEDFRTLKIERIVDDLNA*