Basic Information | |
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Taxon OID | 3300001373 Open in IMG/M |
Scaffold ID | YBMDRAFT_10073737 Open in IMG/M |
Source Dataset Name | YB-Mouth-sed |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of South Carolina |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1786 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Youngs Bay mouth | |||||||
Coordinates | Lat. (o) | 46.17469 | Long. (o) | -123.84933 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F102135 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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YBMDRAFT_100737372 | F102135 | AGGAGG | MFWTGLIVGIFLGANIGIVVAGILFAVKRREAEDHSSETPIDHALMDEVEEVPDELPPLPKSETYFDRYPHS* |
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