Scaffold BBDRAFT_10324307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BBDRAFT_10324307

Scaffold BBDRAFT_10324307

Overview

Basic Information
Taxon OID	3300001371 Open in IMG/M
Scaffold ID	BBDRAFT_10324307 Open in IMG/M
Source Dataset Name	Baker-B-sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3538
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Baker Bay
Coordinates	Lat. (^o)	46.28551	Long. (^o)	-124.05187	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038478	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
BBDRAFT_103243072	F038478	GGAGG	VAKGILGDRSLKGKLQKRRSDLTVELIGFDFGPHEIQIQTAIVKELLEIDEEATTKVFEGLCQSFSDVCLEHNIKVDPVDLFILVDDELGRGASTKFRDVDDGSFFAEILIPTKDFKVHEYWKYTFLHELGHSWFSTKVSRKGMESGYEDLLIDLVAICTFRKTLPPHKRVYREVRKHRTYFLTQQSKRFLGKELYKQILQDPEGYLRDLRQRI*

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