Scaffold JGI12269J14319_10100346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12269J14319_10100346

Scaffold JGI12269J14319_10100346

Overview

Basic Information
Taxon OID	3300001356 Open in IMG/M
Scaffold ID	JGI12269J14319_10100346 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1423
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia amamiensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001142	Metagenome / Metatranscriptome	766	Y
F090655	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12269J14319_101003462	F090655	AGG	VTGDWSEPLSALRWHWGEAYVINCLGTGRWTAERRDTHQTLRDQTPLGLRDQIIADYAARKVSRSLPGQPG*
JGI12269J14319_101003463	F001142	GGAG	MTRAASPRRGPFQVDEEAALAELEQAWTDGGYHAFSADGGTWCAISSAGDVLTASTPGELDQKIKAHWQAMQ*

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