Scaffold JGI12269J14319_10035383

Overview

Basic Information

• Taxon OID: 3300001356
• Scaffold ID: JGI12269J14319_10035383
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3232
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001142	Metagenome / Metatranscriptome	766	Y
F090655	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12269J14319_100353833	F001142	GGAG	MSSAASGTGAPRGVFEVDQDAALAELELAWAAGGYHGFSADGGTWCVITNDGEVLTGGTPDELSRALRAHWQAMQ*
JGI12269J14319_100353834	F090655	AGG	VSSDWDDPLGALRWHWGSAYVISHHGGSAWVAQRRDTRETLRAETPLGLRDKIIADYTGRPVSRDLPAQPGPGSSVPR*