Scaffold JGI12269J14319_10010645

Overview

Basic Information

• Taxon OID: 3300001356
• Scaffold ID: JGI12269J14319_10010645
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7414
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007333	Metagenome / Metatranscriptome	353	Y
F014874	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12269J14319_100106455	F014874	N/A	MSNALQSDVLAEETHSGRVWSLIILLTLLGPMIAVALVPSPAGHWAIVLIGVISIGVFAMTWSGFQYRFLRHGVEIRMLGFRLRSIPKQSIVSYSIEPWTLIRGYGIRGTGSTRAYVWCNQVVHIKTSNGDIFLGHNDPERIVRDLDMVTGIVTRG*
JGI12269J14319_100106457	F007333	AGGAGG	VQEELRHPRSLALSVALGAAMGAALGAATGHIGVWVAAGIAAYIAISIVGGVWSKKPNDQRRTTND*