Scaffold JGI12269J14319_10005841

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12269J14319_10005841

Scaffold JGI12269J14319_10005841

Overview

Basic Information
Taxon OID	3300001356 Open in IMG/M
Scaffold ID	JGI12269J14319_10005841 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10792
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102015	Metagenome / Metatranscriptome	102	Y
F106053	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12269J14319_1000584112	F102015	N/A	MTGNQDVRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADRGDSGTAEPPAGGG*
JGI12269J14319_1000584113	F106053	GGTGG	MPSASGLSRDQRIRCRDRVVQAARLTLANKDHTHYTEGPLRWDGITNRRNAEIGQFPEYSDCSSFATWCLWNGLVLRFGLGDTVNGAGWTAGYTGTMLEHGLPVRYPSNVLPGDCVIYGSGPPGVHCAVIAGMVSGTPMVISHGSEPGPFYLAYDYRPDVLSIRRYI*

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