NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12269J14319_10000801

Scaffold JGI12269J14319_10000801


Overview

Basic Information
Taxon OID3300001356 Open in IMG/M
Scaffold IDJGI12269J14319_10000801 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30821
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007663Metagenome / Metatranscriptome347Y
F010184Metagenome / Metatranscriptome307Y
F014439Metagenome / Metatranscriptome263Y
F019520Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
JGI12269J14319_1000080117F014439AGGAGMSVTLTLTDIDPGGTQVYAFGTVALSGNYPSGGDTVDWTQLVKQIAARGQIIDSSMSDPAYGPIQASFTVQGGTPNQYQMQQGAAANNWKMRGYTTGSSGAEFTGGSAYPSSATGDVITFSAQFRKLT*
JGI12269J14319_1000080122F010184GGAMWQTMMTWLARHLRGRYVLLLEEETARLRAENRALVNSLLGTAGFPPISPEDDARRGVVGLPPVRRRTWTQIAREREMAAGKSPVGRGAAEK*
JGI12269J14319_1000080128F007663N/AMASNPNYVKKQIALDTVSWTVVVAPVDCIAVSIKNSVLVDLRIRTDSADATTQDTISAGSIETVSAPRHSGGVQDGGSGTRFYAGDTIAYLQVVSGTGPALLTFVR*
JGI12269J14319_100008016F019520GGAMRIREYTPNDFDALRRMHAAQGFGYPLPDLESPLFVAKLVLEDDVDDVSAENREGEGREVPHRNSPLDDFASSKGPRRIAMAVLLRLTAETYLLHDPAAGTPRVRWQRFLALHEAAQRSAAARGLDDVQAFLPPRVARAFGRRLARLGWTHDPWPCFSRQV*
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