Basic Information | |
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Taxon OID | 3300001356 Open in IMG/M |
Scaffold ID | JGI12269J14319_10000801 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30821 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (67.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007663 | Metagenome / Metatranscriptome | 347 | Y |
F010184 | Metagenome / Metatranscriptome | 307 | Y |
F014439 | Metagenome / Metatranscriptome | 263 | Y |
F019520 | Metagenome / Metatranscriptome | 229 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12269J14319_1000080117 | F014439 | AGGAG | MSVTLTLTDIDPGGTQVYAFGTVALSGNYPSGGDTVDWTQLVKQIAARGQIIDSSMSDPAYGPIQASFTVQGGTPNQYQMQQGAAANNWKMRGYTTGSSGAEFTGGSAYPSSATGDVITFSAQFRKLT* |
JGI12269J14319_1000080122 | F010184 | GGA | MWQTMMTWLARHLRGRYVLLLEEETARLRAENRALVNSLLGTAGFPPISPEDDARRGVVGLPPVRRRTWTQIAREREMAAGKSPVGRGAAEK* |
JGI12269J14319_1000080128 | F007663 | N/A | MASNPNYVKKQIALDTVSWTVVVAPVDCIAVSIKNSVLVDLRIRTDSADATTQDTISAGSIETVSAPRHSGGVQDGGSGTRFYAGDTIAYLQVVSGTGPALLTFVR* |
JGI12269J14319_100008016 | F019520 | GGA | MRIREYTPNDFDALRRMHAAQGFGYPLPDLESPLFVAKLVLEDDVDDVSAENREGEGREVPHRNSPLDDFASSKGPRRIAMAVLLRLTAETYLLHDPAAGTPRVRWQRFLALHEAAQRSAAARGLDDVQAFLPPRVARAFGRRLARLGWTHDPWPCFSRQV* |
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