NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20158J14315_10191301

Scaffold JGI20158J14315_10191301


Overview

Basic Information
Taxon OID3300001355 Open in IMG/M
Scaffold IDJGI20158J14315_10191301 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004438Metagenome / Metatranscriptome438Y
F040125Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
JGI20158J14315_101913011F004438GAGGMRNITFILIGLFATSCATVNSVIEGGKDIAMTTVDTTVKTAGSISGAALKDVSGVVNTVAETYEGVIDTVVENIDEQTDELQDKPEESK*
JGI20158J14315_101913012F040125N/ANEEPIILTFDDVPYRASDLNEEQLPLAIDLNQIVPELRQLEQRHARLMREKDHLVQDFKRSLEVETPEDTQTEESE*

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