Scaffold JGI20158J14315_10157526

Overview

Basic Information

• Taxon OID: 3300001355
• Scaffold ID: JGI20158J14315_10157526
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 687
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020385	Metagenome / Metatranscriptome	224	Y
F030154	Metagenome	186	Y
F063160	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20158J14315_101575262	F063160	GAGG	MKDYEVMLEDAHGNVSEFTVSIPDLVENVTEYVREEYPESSIVYIMPKGF*
JGI20158J14315_101575263	F020385	AGGAG	MFNLLNKSIKPTVNGVMTKPTFKEILEERQEYLDALKSKGDLYALGFLESSFLYHMGDNGLEPLNPSQLETLAKWKEATQ*
JGI20158J14315_101575264	F030154	N/A	IATRDTIAQQFVPVSGFILMPLRQAQELAQEYRASGIDAVAFNTSVGV*