NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20158J14315_10009590

Scaffold JGI20158J14315_10009590


Overview

Basic Information
Taxon OID3300001355 Open in IMG/M
Scaffold IDJGI20158J14315_10009590 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5587
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F078540Metagenome116Y
F097373Metagenome104N

Sequences

Protein IDFamilyRBSSequence
JGI20158J14315_1000959010F097373AGGAMYICVYMGSQKERQERLMLLAKMKKQHEEDEVSEVLSRHLLEDYMIQIWFLGYQTRTDYLNVLFRSQKRD*
JGI20158J14315_1000959013F078540N/AMVRFNETLIVGISLLAALVLSKGRESVSSLSNIPFINPFTDLLSKAQAQAIEKQETNIGTLENIRQSNLGIAQDILDYEKNISNVKINQLQTELDKTQSFISQQQKVPAGSTLGLSGTGQSLLKKFNDTFNYYSKVWTGEKGPLNQVSIYPDVYIPLNQSTRAAFAQQAEFEKAQERIATANELVFRQQGEID
JGI20158J14315_100095902F078540N/AMVRFNETLIVGISLLAALVLSKGRESVSSLSNIPFINPFTDLLSKAQAQAIEKQETNIGTLENIRQSNLGIAQDILDYEKNISNVKINQLQTELDKTQSFISQQQKVPAGSTLGLSGTGQSLLKKFNDTFNYYSKVWTGEKGPLNQVSIYPDVYIPLNQSTRAAFAQQAEFEKAQERIATANELVFRQQGEIDXXQEEXQTRYGNLSRYG*
JGI20158J14315_100095906F004537AGGLAFFSKPAINNFQINSGNVPLLYPVRVICPAGVTTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFATIDNTIVNYLTITAGAAGTTLVEAQVIPASRDEVPIEVTV
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