Scaffold JGI20155J14468_10081115

Overview

Basic Information

• Taxon OID: 3300001354
• Scaffold ID: JGI20155J14468_10081115
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1209
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037973	Metagenome	167	N
F096042	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20155J14468_100811152	F037973	AGGAG	MKNINKFYALLITMTFGFSLISNVGADDLDLFLSDNSDSGDNSFYKDDGSLVIVRGAKDSGLIVRGTDEGTETEYYVIPKDDGSKTFIYDEGLTVCDSNGCY*
JGI20155J14468_100811153	F096042	GGA	LNIRDKITKASAARKKAAYIQAANNRFGFKVEGKGTYIWTSEEAENESAMWKAENNLSKKCIKKEVKSYELKVVDNNNFWVITELDGTVIVIDTIEYTMAYYMRPRTKKTKVRDWKLPHKCFGYFTDRSCVAIEEVDLAESEEKDSYYRWRASFVKLIKETFK*