Scaffold JGI20159J14440_10006619

Overview

Basic Information

• Taxon OID: 3300001353
• Scaffold ID: JGI20159J14440_10006619
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6779
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20159J14440_100066195	F016956	AGCAG	MEQYQIKIQKNYKMIETYEVWKAPKKAQLAIIDLAITHIKKVESNPDVETEGDNFDYWNSYELEDGTFVDYNIHCGDEWTRLKQDGSGEYEYTDPSTWSWDVACYAVDPPNEENKYHQIDTGREQYLFSYNKSYGNREVEFENDSL*
JGI20159J14440_100066197	F007770	N/A	LGVSLLFLVMSGEGLTTSFRRTKQTTKSNKQLLREFQGIIYASRVMKHMKWYGQAESVRLIEHGDEELPKFQQEYVAIKDTFEFNISVRKSWYKDADLYESHEVEDSFVSLARRFANDNALMYFPDGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICDVWYRYGIMKLQAFDEKVESQLWQDAKTEIKQLMEHEYAR*