Scaffold JGI20157J14317_10052542

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10052542
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009291	Metagenome / Metatranscriptome	320	N
F037973	Metagenome	167	N
F056325	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_100525421	F056325	GAGG	MATRKINXDALXKXVFKKVNKDLGVDAKTPPSQMKSFNEKLKAAPIPFLYRIKNVWKAFAALMAGFFTIGFIIARLTIPSETVMLTASVSPDIYDFNTFDSDGDGEWTLAEAQQAKLALAIQQFEY
JGI20157J14317_100525422	F009291	N/A	MLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSILYEGFSRHYLIVIKRDFMFNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNVTRDRMKKSGFEVLPDDPDLGGDIPSNPGDSTMIEKCMEEVIKECGKDDPEGAELFSKVKVEGYAYSELTNIYGKTVSNLKKIVSEFNTMLKELIQPCLERAK*
JGI20157J14317_100525425	F037973	N/A	SFSLLGLANAESFLDSPSLFDDSGSFNFADSNTNSGDNSFYKDDGSLVIIRGAKDSGLIVRGTDEGTETEYYVIPKDDGSKTFIYDEGLTVCDSNGCY*