Scaffold JGI20157J14317_10024424

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10024424
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3348
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F079926	Metagenome	115	N
F090391	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_100244243	F070557	GGA	MSNEIKQNIIRDLQGDVLSGDHYTINMFSCWLDGSYLGEAHYRKNLAAITECNNNRKKLRAFVINAFTSYIAHDAACSYGYAQKVLVEFLGLDTLNKLNEHLINNVIEFHSTYCEAA*
JGI20157J14317_100244245	F090391	AGGAG	MKDTVKIKREALEKLFDFVRKDIENSHLETIDNEDLEYIINITDALMAAKYSLGLYKNETNVFIELKYLEFLAQIVQDCFDFIAPDTDWNCLSDMLATNLLANALLNARQAIGIEPETKEEQNK*
JGI20157J14317_100244247	F079926	AGGAG	MTTKVVAQPWYDIAVKEKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFVTDYIDLDDLEVI*