Scaffold JGI20157J14317_10011974

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10011974
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5567
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F090391	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_1001197410	F070557	GAGG	MSNEIKQNIIRDLQGDILSGDHYTINMFSCWLDGSYLGESHYRKNLAAITECNNNRKKLRSFVINAFTSYIAHDAACSYGYAQKVLVDFLGLDTLNKLNEQLIDNVIEFHSTYCEAA*
JGI20157J14317_1001197412	F090391	N/A	MLKDTVKIKRDTLEQLTDFVRKDIEVAHLETSDNEDLTYIINVTNALMAGKYSLELYKNENHVFIEIDQLEFLTEHTQDSFDFIAPDTDWNCLSDMLATNLLASAILEARQAMQIEPETKEEQNE*