NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10004763

Scaffold JGI20157J14317_10004763


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10004763 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10351
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (36.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013533Metagenome / Metatranscriptome270Y
F016009Metagenome / Metatranscriptome250Y
F090239Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_1000476323F013533N/AMNEEIKTVAGFIDRFGEPETHLLDNMTQEFVSTYHRHGVDPYELVDGFGLDWLELLLQYNEDIEEYELCAVFRDLINDYKQK*
JGI20157J14317_100047633F016009N/AMINNRWNKEIKRYRVMEHTLRDKSVFIIEWNDKWFFGILGRWHPKVQTLTLEEAIRTIHKLVTLKLKK*
JGI20157J14317_100047635F090239N/AMSKKVIGKKYGIEITKPWNVEMYNWNDDVAKILKIGLYNKLEEFYHKNDIDGMNEIALSFGAGYGEGYDVDSIYDGIFEDLKYVQNYQLNEELEWLVSKNIIKKPKYGFVGYDK*
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