Scaffold JGI20157J14317_10000266

Overview

Basic Information

• Taxon OID: 3300001352
• Scaffold ID: JGI20157J14317_10000266
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59474
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (25.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F025258	Metagenome / Metatranscriptome	202	Y
F048910	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20157J14317_1000026631	F005287	N/A	MKIKSSDIIYSEHNYDECFEYTDGSGRVPDGTAVGYEVDSNSPTRILILFNDITYSKYDHQYWDNYELENDVDRIVIP*
JGI20157J14317_1000026636	F025258	N/A	MSEYKPKPFTKELAEQMKVAMTEPFDEKRTLCNVLKLAYRCSREESYNLQAVQALLLESLWMGQRMHSKLYDEQKQEFNNEHQQQNEDEDPFAVDWSNLDGRNVAQGNWD*
JGI20157J14317_1000026659	F048910	N/A	MKLKLTSLLMALGLLTNAAFAGNSAKIGYASDFFYRGEQKALESVQAAVDLETALLGLDAKLHACTNQSIDEGVDSYRFAAGLGTDFTEGLLSIYGGFNHFEDVAGEALSEIELSGSVNVFGNPTLSAFRNVDEDLYTFEGSLSESFDLSFASLNVRGSVGNTEVTTANNRTYYSVGGGLTRQIGAGVDLGLSVDLIDSDDIEREFVFGTALSFQF*