Scaffold JGI20153J14318_10060567

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20153J14318_10060567

Scaffold JGI20153J14318_10060567

Overview

Basic Information
Taxon OID	3300001351 Open in IMG/M
Scaffold ID	JGI20153J14318_10060567 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_03
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1283
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074041	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20153J14318_100605674	F074041	AGGA	MTSPKIEASLEIPPKPNSQLIKLIEQTGIKGIFPDVLRAIMSPLINLIANRDNDDAVGALNKSVTLIAASDPKNQIELMLATQLAMTHITLGKSARLLDQNYKDVQTINS

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