Basic Information | |
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Taxon OID | 3300001349 Open in IMG/M |
Scaffold ID | JGI20160J14292_10037603 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2370 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F025718 | Metagenome | 200 | Y |
F031840 | Metagenome / Metatranscriptome | 181 | N |
F091571 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20160J14292_100376033 | F091571 | N/A | MQVSTATKKYLITKSNDGCVIAIRSEDKTDKTDFFIGEATMKKNIDNNTFVRHNQLNYNNEPXXXYHEDXX* |
JGI20160J14292_100376034 | F031840 | N/A | MKTFXDLTFTPHANLQDLGVQASLTLDNGYAFSVVGNTEGGDYFKGNHPDNYEVAILNPKGNFVPISASDDVLAYQTPHQITSLMRQFHLDGVLHEKLLVDMRYDFNEERVASYQD* |
JGI20160J14292_100376039 | F025718 | N/A | MIKIKDNKVNGFIAKVNIVDRKSGEIVDRNVIMKCEHHASIEDLNADLLKFGLPRKFEFVEWVD* |
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