Scaffold JGI20160J14292_10024454

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10024454
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3295
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001407	Metagenome / Metatranscriptome	702	Y
F018287	Metagenome	236	N
F051542	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100244542	F001407	AGGAG	MSIIKIDQKRLDNIAKAYWSTSGEMREMWGRKWYELLKQIGRRIDEAKRSTANSGQIH*
JGI20160J14292_100244544	F051542	GAGG	MRLIIILILLTGCSAKFDSFDPTTSALRWMLTNEKK*
JGI20160J14292_100244545	F018287	AGGAG	MTYKHVDEMLMEEELNSKVFRSDPIKKILDPNRNRTDRFNNNYLMELKCRYHSVDLIKSWGGATIEKDKYYALTQSCGDKIPDYVNKFPCGSYYAWNLKKIKEPTWYEKMMPRTTNWNNEKIKKVVGDLNFDEATKLI*