Basic Information | |
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Taxon OID | 3300001349 Open in IMG/M |
Scaffold ID | JGI20160J14292_10014106 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4899 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007114 | Metagenome / Metatranscriptome | 357 | Y |
F013571 | Metagenome / Metatranscriptome | 270 | Y |
F030762 | Metagenome / Metatranscriptome | 184 | Y |
F064116 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI20160J14292_1001410611 | F030762 | N/A | MQDLKLAFINFLTFTVSFSDAEQWLKLTLLVVSIAYTVLKIFNINKKRE* |
JGI20160J14292_100141063 | F064116 | N/A | MKDLIDFKNAQITALQKRLFELETKVGNYETYIFELTDENYPTEYKQIVKNELLKTE* |
JGI20160J14292_100141064 | F007114 | GGA | MESITKINDSAWEKLKKQIEYHLEQDSNLTDIRINYQVKIPERGTRNYLGLNVNINE* |
JGI20160J14292_100141068 | F013571 | N/A | MEINLILLVPNAMILGWQYHEPEKGFEYSELNLFLFFGQIQVRWE* |
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