NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20160J14292_10012292

Scaffold JGI20160J14292_10012292


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10012292 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5389
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085127Metagenome111N

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_100122921F085127N/AMRTIFLLISFIPSIIFAEDYKFLCHGEEVKYIEGDPSTKRGAKKIIGIQVYQKGMRVDGEWFDNKTDLTEDYSLERSYIKTKDNINGTRSFTTSALIENKDIQTIKIDKVEIDVVTDKILWRHEFNRVDITNDKAELIYAFRKNFTGSCKKEGGS*

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